RnoEX0006462 @ rn6
Exon Skipping
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142844398-142847819:+
Coord C1 exon
chr7:142844398-142844628
Coord A exon
chr7:142846389-142846581
Coord C2 exon
chr7:142847652-142847819
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCTCCATTGCTTTTCTGCAGGGC
3' ss Score
10.33
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGTTACCCCTTTTTGTCCAGCGCACAGTGGCCCGAACCATTGTTTTACAAGAGATTATCGGCAAGGGCCGGTTTGGGGAAGTATGGCGTGGCCGCTGGAGGGGTGGTGATGTGGCTGTGAAAATCTTCTCTTCCCGTGAAGAGCGGTCGTGGTTCCGGGAGGCAGAGATCTACCAGACTGTCATGCTGCGCCATGAAAACATCCTTGGGTTTATTGCTGCTGACAATAAAG
Seq A exon
GGCAAGATGGCTTCTGTGGGAATGCTCAAAAGTGGGCTGCACACGCATGGCAGGCAGAGCATTCTTGGCTCTGTAACGGGTGCACAAATGGGATCTTTCTGCTCTTGCCATGGCCCCTGGCCTGAGGATGGCCACCAACTGGAAGGAGACTTATCCAGTGAGACAGCTGCTGGGCAGGCTCTCCTCCTGGACG
Seq C2 exon
ACAATGGCACCTGGACCCAGCTGTGGCTTGTCTCTGACTATCACGAGCACGGCTCACTGTTCGATTATCTGAACCGCTACACAGTGACCATTGAGGGGATGATTAAACTGGCCCTGTCTGCAGCCAGTGGTTTGGCACACCTGCATATGGAGATTGTGGGCACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
A:
PF0006920=Pkinase=PD(20.7=40.5)
C2:
PF0006920=Pkinase=FE(19.4=100)
Main Inclusion Isoform:
ENSRNOT00000009345fB564
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTGATGTGGCTGTGAAA
R:
CTGCAGACAGGGCCAGTTTAA
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]