RnoEX0006465 @ rn6
Exon Skipping
Gene
ENSRNOG00000006934 | Acvr1b
Description
activin A receptor type 1B [Source:RGD Symbol;Acc:735207]
Coordinates
chr7:142817157-142839319:+
Coord C1 exon
chr7:142817157-142817277
Coord A exon
chr7:142836928-142837032
Coord C2 exon
chr7:142839080-142839319
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGGGTGTGTTCATTCTCCAGAAT
3' ss Score
7.81
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGGCGCTGCTGGGCTGCGGCGGCGGTTACTATGGCGGAGTCGGCCGGAGCCTCCTCCTTCTTCCCCCTTGTTGTCCTCCTGCTCGCCGGCAGTGGCGGGTCCGGGCCCCGGGGGATCCAGG
Seq A exon
AATGAATCACTGTGAACGAGGCCAGCACCACCGAAAGGGGAATAGCTATCAGGAACCAGAGACTCACTCCTGTCTCCTCTGCCCCACTAATTGATGGACTCTGAG
Seq C2 exon
CTCTGCTGTGTGCATGCACCAGCTGCCTACAGACCAACTACACCTGCGAAACAGATGGGGCCTGCATGGTCTCCATCTTTAACCTGGATGGCATGGAGCACCACGTACGCACCTGCATCCCCAAGGTGGAGCTTGTGCCTGCTGGGAAGCCCTTCTACTGCCTGAGTTCAGAGGACCTGCGCAACACGCACTGCTGCTATATTGACTTCTGCAACAAGATTGACCTGAGGGTGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006934_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0106418=Activin_recp=WD(100=96.3)
Main Inclusion Isoform:
ENSRNOT00000009345fB566
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTTCTTCCCCCTTGT
R:
AGGTCCTCTGAACTCAGGCAG
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]