RnoEX0006469 @ rn6
Exon Skipping
Gene
ENSRNOG00000004828 | Acvr1c
Description
activin A receptor type 1C [Source:RGD Symbol;Acc:621789]
Coordinates
chr3:44311191-44342355:-
Coord C1 exon
chr3:44342281-44342355
Coord A exon
chr3:44336744-44336883
Coord C2 exon
chr3:44311191-44311421
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGTATTTTATTTCAGATT
3' ss Score
10.64
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCATGACCCCAGCGCGCCGCTCCGCACTGAGCCTGGCCCTCCTGCTGGTGGCACTGGCCTCCGACCTTGCGGCAG
Seq A exon
ATTGACTTCTGCATCTTCCTTGGTTTTGAGAGTTGGATCTCAAAATAGGAGGGCTACCCAGCGGTTCCCTAGAATGTGAACAATGCAAACGTCTACTTTCCCTTAGGAGTTCCGTAAGGAGGAAAAGGGACAGGGAGATG
Seq C2 exon
GACTGAAGTGTGTGTGTCTTTTGTGTGATTCCTCAAACTTTACCTGCCAAACCGAAGGAGCATGCTGGGCCTCTGTCATGCTAACCAACGGGAAAGAACAGGTGATCAAATCGTGCGTGTCCCTCCCGGAACTAAATGCTCAGGTCTTCTGTCACAGTTCCAACAACGTGACCAAGACCGAATGTTGCTTCACAGACTTCTGCAACAACATCACTCTGCACCTTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004828_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0106418=Activin_recp=WD(100=96.2)
Main Inclusion Isoform:
ENSRNOT00000059280fB567
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCCTCCGACCTTG
R:
GTGGGAAGGTGCAGAGTGATG
Band lengths:
253-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]