RnoEX0006936 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197809255-197810286:-
Coord C1 exon
chr2:197810184-197810286
Coord A exon
chr2:197809470-197809612
Coord C2 exon
chr2:197809255-197809391
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCAAAACTTTCCCTTTTTAGGAG
3' ss Score
8.81
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
CCTTGCCCCCCTGAGCAGCCAGACCCCAGGGCCCTGCAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCACCGAAG
Seq A exon
GAGAATGAAATGGGAGACTTAGTCAAATCGTAAACTCGAGACTACACAGCATAACAAAGATATAAGCCATAAAACCCTAAGCGTGGGAAACTCCCCCTCCCTCCTTCCACACCAACTTCAGGAAGCCTCACACATGATAAAAG
Seq C2 exon
TTCAAGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTTTATGTCCGTCACACTGAAAAGGTGCAGGATGGGACCCTGTGTCAGCCTGGATCCCTAGACATTTGTGTGGCTGGACACTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-'9-15,'9-14,10-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000074156fB640
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGAGCAGCCAGAC
R:
CAGGCAGTGTCCAGCCAC
Band lengths:
234-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]