RnoEX0006951 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12230391-12231737:+
Coord C1 exon
chr7:12230391-12230493
Coord A exon
chr7:12231100-12231211
Coord C2 exon
chr7:12231544-12231737
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGTCACCTTGCTCTTTAAGAGA
3' ss Score
6.36
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GGTCTCGGAGACTCACGGACCGAGTTCCGCGAGTTTTCACTGCACAGATGAGGAACCTGAGGCCTGGAAAAACGGAATGGTCGGTTCCTGGCCACCCAGGAAG
Seq A exon
AGAACCCACGACTGGTTCCAAGCACCCATGCCGTGTTGTGAGCAACTGGAACTCAGCTTAGCTCAAAGGGAGTCAGTGCACCTGGCATCTTGTCGCGCTGCCCTACGCGCAC
Seq C2 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCGCGAGTTTTCACT
R:
AGCTCAGGAGAATCCACAGCA
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]