RnoEX0008267 @ rn6
Exon Skipping
Gene
ENSRNOG00000012761 | Ak8
Description
adenylate kinase 8 [Source:RGD Symbol;Acc:1303144]
Coordinates
chr3:7279340-7282097:+
Coord C1 exon
chr3:7279340-7279528
Coord A exon
chr3:7280348-7280447
Coord C2 exon
chr3:7282013-7282097
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAAACCAGATCCCCTCCTAGGTG
3' ss Score
3.15
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGGAACCCGGGACCAGGACTCGCCACAGCAGAGGCGCTCACCGATGACGCATAGATTGGCGTCCTAGCAACGCCGTTACTAAGGAGCGGCTCGTTGTCCGAAACATGGATGCTACCTCGGCCCCGCACCGCATCCCCCCAGAAATGCCTCAGTACGGGGAAGACTACCACATCTTCGAGATGATGCAG
Seq A exon
GTGTGATCCAGCTTTCGACTTGTGCTCTCCAGAGGTGAAAATGTCTTGTAGGGGCTAGACAGATGCGCTCTTTACCACTCGATGGTTCTGAGAGCCACAG
Seq C2 exon
AGCATGCTGGAGCAGCTCCTGATTCACCAGCCAGAGGACCCCATCAGCTTCATGATCAGTCACCTTCGCAGGAACAACGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012761_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000017029fB861
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCGCCACAGCAGAG
R:
TCCTGCGAAGGTGACTGATCA
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]