RnoEX0009323 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73817587-73820829:-
Coord C1 exon
chr16:73820728-73820829
Coord A exon
chr16:73820065-73820152
Coord C2 exon
chr16:73817587-73817687
Length
88 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTCCCACCCCTCCAGGCC
3' ss Score
8.68
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCCGATGCTGCTACCAGCTTTTTGCGGGCGGCACGCTCAGGAAACCTGGACAAGGCTTTGGATCACCTACGCAATGGAGTGGACATTAACACCTGTAACCAG
Seq A exon
GCCCAGTGGAAATGATACAACACAACACAACCTTCCCCTTCCCAGGGCCAAGTTGGTCTTGTATGAGCTTCAGCTCACAGCTAAGAAG
Seq C2 exon
GGAGCGGCACTATTGGGAGGTGTGGCCTTGTTGGAGGAGGTGTGGCCTTGTTGGAGGAGGTGTGGCCTCGTTGGAGGAAGTGAGTCACTGTGGAGGTGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.7=79.4)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000064070fB1054
Main Skipping Isoform:
ENSRNOT00000064070fB1055
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGCTCAGGAAACCT
R:
ACACCTCCACAGTGACTCACT
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]