RnoEX0009331 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73682797-73687422:-
Coord C1 exon
chr16:73687146-73687422
Coord A exon
chr16:73683533-73683637
Coord C2 exon
chr16:73682797-73682880
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTGTGCTTTGTCCTAAAGCAC
3' ss Score
6.73
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AACAGTGGACTGGTATAAACAGGGTTCAGCAGCATCATATCCACAAGAGGCCGCACAAAGTTCCTGGCAAGAGGAGGTCACGCAAGGCCCACAGTCATTCCAGAGAAGGATCACCACCATCCAAGGGCCGGAGCCCGGCACACTTCAGGAATATGAGCAGGTGGTGGTGTCCACCAGGGAGCATGTGCAGAGGGGGCCACCTGAGAGCGACAGCCCCAAGGCCGGGAAGGACCCAAGTCTGTGGGCATCGGAGAGTGCCTTCTCTCAAGAGGTGCAG
Seq A exon
CACATCCACCAGGAACTGGACAAAGAGCTGGGGGAGAGCGGGGGCCTGAGTGACGACGAGGAGACCATCTCCACCAGGGTGGTCCGCCGAAGGGTCTTCCTGAAG
Seq C2 exon
GGGGATGAGCTTCAGAATATTCCAGGAGAGCAGGTGACAGAGGAACAATTCACAGACGAACAGGGCAACATTGTCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.714 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064070fB1055
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCCACAGTCATTCCAG
R:
TGTTCCTCTGTCACCTGCTCT
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]