RnoEX0011075 @ rn6
Exon Skipping
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225570721-225578515:+
Coord C1 exon
chr2:225570721-225570956
Coord A exon
chr2:225572966-225573048
Coord C2 exon
chr2:225578381-225578515
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACACACACACACTGGTGCAGGTG
3' ss Score
4.25
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATTTCAGTTTTTCTGACTGTTAAATGAGAGGATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAACGTGTTTGGGCATCAGGCCAACTCTCTGCCGCTATTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAACTCCATTTTTGATCCGGAATACATCAAGGAGCTGGTGAATGATATCAGGAAGTTCTCCCATGTGTTACTATATTTGAAAGAAGCTATTCTTTCAG
Seq A exon
GTGTTGTAGCTGGCTCTTGATTTACAAATAAATGAACTCCTTAAAGAGAGAGATCTGAGGCCTGAATCCATACTCTGCCTCGG
Seq C2 exon
ACTGTTTTAAAGAAGTCATTCATATCCGTCTGGATGAACTTCTTCATGTTTTAAAGTCTGTAATGAGTAAGCATCAGAACCTCAATTCTGTAGACCTTCAGAACGCTGCAGAAACGCTCGCTTCGAAAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAAGTTCTCCCATGTGT
R:
ACTTTCGAAGCGAGCGTTTCT
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]