RnoEX0011655 @ rn6
Exon Skipping
Gene
ENSRNOG00000005074 | Arl6ip6
Description
ADP ribosylation factor like GTPase 6 interacting protein 6 [Source:RGD Symbol;Acc:1564819]
Coordinates
chr3:38753063-38770393:+
Coord C1 exon
chr3:38753063-38753195
Coord A exon
chr3:38766879-38767057
Coord C2 exon
chr3:38769249-38770393
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCCTGTTTTCTAGGAA
3' ss Score
12.1
5' ss Seq
AATGTGATT
5' ss Score
-1.75
Exon sequences
Seq C1 exon
GATTCTGGTCTCTGCTGATAATATCTCTAACTGCTGGATTATCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCTTTTGAACCAGGAATGTTTCCGCCTACTCCTCTTTCACCTGCTAGGTTCAA
Seq A exon
GAAACTGACTGGACATTCTTTCCACATGGGCTACAGCATGGCAATTCTGAATGGTGTTGTAGCTGCTCTCACTGTGGCATGGTGCCTTATGTAAACCCACAATAGAACAACATTGTTGGTGAAAGTCATTGTTTTTGAAGTTACAGAAATGAAATTGCCTACTCAGAAGACTGAGAAAT
Seq C2 exon
AATGAAGATGGAGTCACCTAACAGTTGGAATTATCCATATCCATTAGATGCCAGCCCATCAGTTTACCTATGGCTGATGATCTCTCTCCAAGACTTCAAAGGAGATATTAGTATAAAGCCAGCTTCTGAGTTTAGTGCTTCATCAGAAATTTCGTTCCAAATTGAGTTAGGGATCCTTTAAATGCTGCCACAGTTTTGTACTATCAAAAATTAGTCTCTAGTTATGTATTAAGTCTAATATTCAATGTATTAGTTTCCCAGTATCTTTACCTGCTAAGTGGAAAAAAATACTAAACCAAGACATTTTAAACTGAAAACAGTGCAACAGTGTTTGTAAGACCTGGATAAGACACTTAATATAATTTGTAATTTCAAGTATATCAAGTATAACAAGAGCTGAAAACTAATAATATCAAGAATTAACAGAATTTCAGAGTAAACCTTTTGTATACATAAAAGCCAGAAAGACTGGAAATGCAAAGATATTATTTATTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005074_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF150621=ARL6IP6=FE(57.1=100)
A:
PF150621=ARL6IP6=PD(23.4=56.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGGATTATCCTGTTGCA
R:
GCACTAAACTCAGAAGCTGGCT
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]