RnoEX0011868 @ rn6
Exon Skipping
Gene
ENSRNOG00000014317 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:RGD Symbol;Acc:1308867]
Coordinates
chr3:23297996-23306173:+
Coord C1 exon
chr3:23297996-23298056
Coord A exon
chr3:23305099-23305107
Coord C2 exon
chr3:23306103-23306173
Length
9 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTCTTCCCTTTTAGGAT
3' ss Score
14
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
Exon sequences
Seq C1 exon
GCGCCGTGAAGGCTGCAGTTCTTCCGTTAACTTGCATTTTCGGGAAGCCTGAAGTTCCCTG
Seq A exon
GATGAGAGA
Seq C2 exon
GGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCAATCAACACCAAGAATCAAGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014317-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.080
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF046999=P16-Arc=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCATTTTCGGGAAGCCT
R:
TCACAGCTTGATTCTTGGTGTTGA
Band lengths:
101-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]