RnoEX0011994 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86754012-86757618:-
Coord C1 exon
chr11:86757518-86757618
Coord A exon
chr11:86755874-86756016
Coord C2 exon
chr11:86754012-86754242
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCCATCTTTACACAGAGG
3' ss Score
7.41
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GGGACCCGGATGGGATGTTGTATGGAGCAGTGGTGCTAGGTGCTAGGTGAAAGGCCATCATCTGAGGCCCACAACATCACACCTGCCTGGATGTTCCTGAG
Seq A exon
AGGGAAGGAAGCTAACTGTTGTCCACAAGACTAATAGCTGTCTGTCCGGTCACCTGGCCTGGTGGTTCTAAAGCTCAGCTTAGATGGGCTGATGCTTCCAGAAAGATAATCAGACTCCATGATCCACCTCAGCCCTTCCTAGG
Seq C2 exon
GCTGCTGGCACCCTGGTCATGGAGGACTGCAATGTGCATTCGGCCGCCAGCATTCTGGCCTCGGTGAAAGAACAGGAGGCCCGATTCGAGCGGCTGACACGGGCACTAGAGCAAGAACGGCGCCACGTCGCCCTGCAGCTGGAGCGTGCCCAGCAGCCTGGCATGAGCAGTGGTGGTATGGTGGGCAGTGGGCAGCCCCTGCCAATGGCCTGGCAGCAGCTGGTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'7-7,'7-6,8-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.775
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTAGGTGAAAGGCCATC
R:
CATACCACCACTGCTCATGCC
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]