RnoEX0012529 @ rn6
Exon Skipping
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60775286-60783380:-
Coord C1 exon
chr3:60783281-60783380
Coord A exon
chr3:60775676-60775790
Coord C2 exon
chr3:60775286-60775361
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTGTTTTGTAACAGGTA
3' ss Score
9.53
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACACTAGATGGCAACTTGGGAAGTATTGCCATCCCAAGTATAGCAAGAGCTTAGGGATTCCTGTTAACAGAATAAAACTCATGGCCCACCAGCTACAAAG
Seq A exon
GTATTTCTGTGTAAACCAGGGATGGTTGTAATCCTCCTGCCTCAGCCTCCCTTAAGTGGTGATTTTAGGCACATACCACAAAGCCTGGTCTAGTTTTTCTTTTCAGACTTAAAAG
Seq C2 exon
TGTCTTTGCCATGAAACAGAGGACATGATAAACTGTTTAACTTAATGAAATTCAAGTTGCATGTGAATTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTAGATGGCAACTTGGGA
R:
CTGGCAGAATTCACATGCAACT
Band lengths:
176-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]