RnoEX0013246 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88938165-88941314:+
Coord C1 exon
chr10:88938165-88938377
Coord A exon
chr10:88940578-88940613
Coord C2 exon
chr10:88941164-88941314
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCTTTTTTTCAGAGC
3' ss Score
11.99
5' ss Seq
TAGGCAAGC
5' ss Score
1.14
Exon sequences
Seq C1 exon
GTTCTGAATCAGACAGAGGACCACCGCCAGAGGGTTCTGCAGGCGGCTGCTAAGAACATCCGGGTGTGGTTCATCAAGGTGCGGAAGATGAAAGCTATCTACCATACCCTGAACCTCTGCAACATCGATGTGACGCAGAAGTGCCTGATCGCGGAAGTCTGGTGCCCCGTCACTGACCTGGACTCCATCCAGTTTGCACTGCGAAGGGGCACG
Seq A exon
AGCTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAG
Seq C2 exon
GAGCACAGCGGTTCCACTGTCCCCTCCATTCTGAACAGGATGCAGACAAACCAGACACCCCCGACGTATAACAAAACCAACAAGTTCACGCACGGCTTCCAGAACATAGTGGATGCTTATGGGATCGGCACTTACCGAGAAATTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'25-25,'25-24,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(22.0=100)
A:
PF0149614=V_ATPase_I=PD(0.3=8.3)
C2:
PF0149614=V_ATPase_I=FE(6.3=100)
Main Inclusion Isoform:
ENSRNOT00000087076fB1736
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATCGATGTGACGCAGA
R:
CAGAATGGAGGGGACAGTGGA
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]