RnoEX0013292 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65780671-65818521:-
Coord C1 exon
chr4:65818276-65818521
Coord A exon
chr4:65784371-65784564
Coord C2 exon
chr4:65780671-65780804
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCGTCTTTCTACTCTGACAGATA
3' ss Score
8.89
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTCAAGGTTCTGGGCGCAGGGCAGTGTGCTCCTGTCTTAATTCACACTAAGTTTGCCACTAGTGGAGTCCTCGCCATGTCATTTCTACCTCCAAAGTAAGTCATCAGAGTCTGCTCGTCCACATCTGGTCCAGGCGGGAGTACGAGGAAGTCCGCTTCTACACCCGTGCGCACAAACACGTCCGTGTGGGACAGTCCATTGAGCTTCGTCATTAGTCCAGCCTATTACAGACATTCCTGGAACAG
Seq A exon
ATATTTAAATGTTTTCCATAAGAAACAGTGAAAACAAGAGCTGTGAATGTAGCTCAGCTAGCGGAGGACCTGCTTAGTATCCATGAAACCCTGAGTTCAATCCCCGGCATCACATAAACCAGATGTGGTGGCACATGCCCGTAATCCCAGCATCAGGGAGGTGTGGGCATGAGGACCAGAAGTTCTTTTACATG
Seq C2 exon
ACTAAGGCTGGGCCAACATGGCGTCTGTGTTTCGAAGTGAGGAGATGTGCTTATCCCAAGTGTTTCTCCAGGTGGAGGCTGCATACTGCTGTGTGGCTGAGCTGGGGGAGCTTGGTTTGGTTCAATTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(1.7=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCTCGCCATGTCATT
R:
CCACCTGGAGAAACACTTGGG
Band lengths:
258-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]