RnoEX0013656 @ rn6
Exon Skipping
Gene
ENSRNOG00000016998 | Atxn1
Description
ataxin 1 [Source:RGD Symbol;Acc:3624]
Coordinates
chr17:19321423-19378495:+
Coord C1 exon
chr17:19321423-19321551
Coord A exon
chr17:19370207-19370391
Coord C2 exon
chr17:19378432-19378495
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTGATCTGTGCAGGAA
3' ss Score
9.2
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCGGGCCTCTTACACTGAATTTCCCTACTGCCACCCTTTCTACTCAAGCAAAATCTTCAAGAAAAGATCGCCTGGGAGGGAGGTAGCTGCTTGTGGCTTTGCACTGTGATGAGGGCAAATGATACAG
Seq A exon
GAAACTCCCTGGAGAAGGCTGGGTGGATGTTGTGCAGAGCTCCTGTATCGATCAGGGACACCGCTGTGCTATAGTGGGTGGCTGAGGTCATTCTTATCAAGTTACTCTAATTGTTGACCTTGAGGCCTATCGGGTGACAGAACCATATAGACGGATCCCTGGTTACAGAATGCCCTTGTTTAGAG
Seq C2 exon
TTTTCCAAAGAAAATAGACCAAAACTTTCTTCTTGACAAGAAACAAACCTGCTGTCGTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016998_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGGCCTCTTACACTGAA
R:
CCTCTGACGACAGCAGGTTTG
Band lengths:
193-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]