RnoEX0013877 @ rn6
Exon Skipping
Gene
ENSRNOG00000007625 | B3galt1
Description
Beta-1,3-galactosyltransferase 1 [Source:RGD Symbol;Acc:1311898]
Coordinates
chr3:54014586-54267292:+
Coord C1 exon
chr3:54014586-54014686
Coord A exon
chr3:54127338-54127385
Coord C2 exon
chr3:54264671-54267292
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCATTGCCTTCTTTACAGGAA
3' ss Score
9.48
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TCAAACAAGATGTTTCATCTTTTATTTTTTACCCAGAATTCACTCGGAAAAGCCATGTGGAGCGACTCCAGTTAAAGAAGCATGAAGACAAGTCTACTGGG
Seq A exon
GAAAGAAGAAATGGGTTTCCATGGACCTATCGATGATAATCATCTCAG
Seq C2 exon
AGTTCTGAGGAAGATTTCTGAGGCTTGGAGCTTCCATCGGGTTTGGAAGAAAGTAAAGTGAATTCCATGATGCCACAGCACAAATAAAGCCCATGGACACCCACCAAGCAATTCCTCTCTGGCAGAATTTTTAGATTGCCGAGTAATATGCTGCCTTCGCGAGGGGGCAAGAAACTAGTGCCCAAAAGACGTGTTCTTCAGTATTTGGATTAGACGCGTTCTGAAGAAAATGGCGTCAAAGGTTTCCTGCCTGTATGTGTTGACCGTTGTGTGCTGGGCCAGCGCTCTCTGGTACTTAAGCATAACAAGACCTACTTCATCATACACTGGCTCAAAGCCATTCAGTCACCTAACAGTTGCCAGGAAAAACTTCACGTTTGGCAACATAAGAACTCGACCTATAAACCCACATTCTTTTGAGTTTCTTATAAATGAACCCAACAAATGTGAGAAAAACATTCCTTTTCTTGTGATCCTCATTAGCACCACCCACAAGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007625-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0176216=Galactosyl_T=WD(100=58.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCCATGTGGAGCGACTC
R:
GGGCTTTATTTGTGCTGTGGC
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]