RnoEX0014313 @ rn6
Exon Skipping
Gene
ENSRNOG00000018798 | Bcan
Description
brevican [Source:RGD Symbol;Acc:2194]
Coordinates
chr2:187370019-187372008:-
Coord C1 exon
chr2:187371027-187372008
Coord A exon
chr2:187370798-187370811
Coord C2 exon
chr2:187370019-187370127
Length
14 bp
Sequences
Splice sites
3' ss Seq
CGCATGTCTTTCATACACAGGAA
3' ss Score
8.4
5' ss Seq
TAGGTGATT
5' ss Score
4.02
Exon sequences
Seq C1 exon
AAAGAGTGTGTTCATTTCCTTCCTGAGGGCACGACGGCCTGGCTCCTGATTTGGCTCAGAGGTCGCCCTAACCCTCTCTGGGCATCCACCTCACTTTCCCTATGTAAGAGCAATGGGCTCCTCAGAAAGAGAAACTGTTTCCAGAGCTGATGGCCAGGGGGGTTGGGGGGGTGGCCTCTCCCTGTACCCTTCTCCAGTACACTCCAAGTTGTAGGCTTTCACAAAAGATGGGTGGGGGAAGGAGCAACTGGATGGAGGCCAGACTGGCAGGGACAGGGTCTTTGTCCCGGCTGGCTTCTGAGCCAGGGGATCCGGTGGGAAAGCCTGTGCCAGGCAGAGGGGAATGGCTGGGAGCAAAGCGGGAGGGAGGGAGGGGGCAGAGGATGTTGGGCACCAAGGGAAGCTTCCTTACAAGTCATTCCTGGTGGAGAGGAAGCAGGAGAAGCTGCAGTTTCAGCGGGATTCAGTCTAGGAGGCCCTCCTGGAAGAGGACGTGTCAG
Seq A exon
GAACCGGTCTCTAG
Seq C2 exon
TTCTTCCAAGTTTGCAGCATGATCCCATTGCTTCTGTCCCTGCTGGCAGCTCTGGTCCTGACCCAAGCCCCTGCAGCCCTCGCTGATGACCTGAAAGAAGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018798-'4-6,'4-5,5-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(12.1=54.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGAAGCTGCAGTTTC
R:
AGCAATGGGATCATGCTGCAA
Band lengths:
98-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]