RnoEX0016123 @ rn6
Exon Skipping
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5604756-5772857:-
Coord C1 exon
chr16:5772775-5772857
Coord A exon
chr16:5716106-5716328
Coord C2 exon
chr16:5604756-5604872
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCACTGATTTGATTTTCCAGGCT
3' ss Score
8.66
5' ss Seq
TTGGTATTC
5' ss Score
0.59
Exon sequences
Seq C1 exon
GATTTCCTCGTTCTTCATGGCCTCGTTCTTCAAGCTGTGTGTGAGGACGGAGTCATCTCTGAATGTAAAAGGCAAGAATAAAG
Seq A exon
GCTTGGAGCAGATCCTGGAGGAGGAGGAGAGAGAGTGGGGACATCCTTCCTCCTAGAAATCTTCAAAGCACGGCCTAAGGACAGATTGGAACTTCTTCTTTGTGAAACCTTCAGGATGACCTTGAACTCAACTGAAAATGTTCCCCTAGTTAAAACCCCCTTAGTCAACCAACCACCAAACACACAGAGAAAATGGTTACACCAGCAAACCTCTGCACTCTTG
Seq C2 exon
AAATACAAAGAGTATGAGAAAGACGTTGCCATTGAAGAAATCGACGGTCTCCAACTGGTGAAAAAGCTGGCCAAGAACATGGAAGAGATGTTTCACAAGAAGTCCGAGGCAGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287-'3-7,'3-6,4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000048043fB2233
Main Skipping Isoform:
ENSRNOT00000048043fB2236
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCTCGTTCTTCATGGCCT
R:
CACTGCCTCGGACTTCTTGTG
Band lengths:
196-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]