RnoEX0016546 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53179717-53186162:-
Coord C1 exon
chr13:53186001-53186162
Coord A exon
chr13:53182624-53183253
Coord C2 exon
chr13:53179717-53179800
Length
630 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGTCTTGATGCAGGAT
3' ss Score
9.73
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
AGTGCACACTTGGCCATGATCGATACTCTAATGATGGCTTACACTGTAGAGATGGTCAGCATAGAGAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATCGAGGATGCTGTCATGTACTGGATAAATAAG
Seq A exon
GATACATTTTAAAAGAAAATCCCATAGGCTGCTAGAAAAAAAAATATACTGAGATTCCACCTTACAGCAGTCAGAATGGCCAAGATAAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAGCACTCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAACCACTTTGGAAATCAGTCTGGAGGTTCCTTGGAAAACTGGACATTGCACTACCTGAGGACCCAGCTATACCTCTCTTGGGCATATACCCAAAGATGCTCCAACATACAACAAAGTCACGTGCTCCACTATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATTAAAGAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATCAAAAACAACAACATTCACTTTTATACAAAAAAAAAGAAAAGAAAAGAAAACAAACTTAAGTTCAGTTGCGCTCCATGGCATCTATACCAACAAAGCAAACAATTACATAAAAACTTGCACAAAAGGGTTTGAAATGGTTTTATATATACTTGCCAAAGCCTGGAGGGATAAAGATGACCTTCAATAAATAAATGGAAAATGAACTCTG
Seq C2 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACACGGCTGAAGCTCCAGGAGGTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.7=16.7)
A:
NO
C2:
PF0030726=CH=FE(17.1=100)
Main Inclusion Isoform:
ENSRNOT00000091015fB2313
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACACTTGGCCATGATC
R:
CTTTTGACCTCCTGGAGCTTCA
Band lengths:
246-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]