RnoEX0016691 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24660479-24676524:-
Coord C1 exon
chr6:24676371-24676524
Coord A exon
chr6:24662268-24662310
Coord C2 exon
chr6:24660479-24660712
Length
43 bp
Sequences
Splice sites
3' ss Seq
GTTTGCATATGTTTTTCTAGGAT
3' ss Score
9.92
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CTTGTATTTATTCCCTCCAAAGGAGCAACACTCTCCCTCAGCCGTCCCCTCTACCTCTCTCCAGCCCTCAAGACTGCTTGGTAGTGCAGCTGCCTCATCGAAATAAGCTTCCTGCAGGGACACTGCCCCAGGGTGCTACCTTCAGAGGACACAG
Seq A exon
GATTCACAAGTCGTGGCTGTCAGTTCGTGTTCTTGCCTTCTAA
Seq C2 exon
AAAGAAAGGACTTCAGACATTTTTCTAGAGCTAGTCATGGCACATGACACAGAGGCTCTAGAAGAAACCTCCGTGGTCAAGTTCAAGAACCAGGACTTTAGATTCTTACGGGATCGTTGCCTGAGCAGGGGTCAGCTGTTTATAGATGATACATTCCCTGCTGAGGCATCTTCCATTGGCCAGAAACTGCTCATGGGAAAGCGCCTTCCAAAATTGGAGTGGAAGCGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064816=Peptidase_C2=PU(10.8=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCTTCCTGCAGGGACACT
R:
TGGTTCTTGAACTTGACCACGG
Band lengths:
143-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]