RnoEX0017652 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45112839-45117520:-
Coord C1 exon
chr3:45117417-45117520
Coord A exon
chr3:45116753-45116914
Coord C2 exon
chr3:45112839-45112921
Length
162 bp
Sequences
Splice sites
3' ss Seq
GATCCTCTTCCTGTTTGTAGCAA
3' ss Score
7.76
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATCAGAAAAGCCATGGAGACATCAAGGGCGGCTAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
Seq A exon
CAATCAAAGATGAATTAAGAGAAAATAATAATTTGAAGTAAAGGCCTGAAGAGAAAGCAGATGTCTTCGTTCCCATGTGAGGTTTGGCCATTTGCTCTGGCCAATGTAGCATTTATAAACGATGCTTTAAAAATGTTATTACAGGGACTCATTCTTCAGAAG
Seq C2 exon
ATGTAAATTGGAGTCTGAAATAAGATCTCGTCTCAATGAGGAGAGCATTGGAGATGAATGTTTTTGTGAGCTTATGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'9-13,'9-12,10-13
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF048228=Takusan=PD(9.1=14.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091777fB2501
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACATCAAGGGCGGCTAAA
R:
AAGCTCACAAAAACATTCATCTCCA
Band lengths:
162-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]