RnoEX0017658 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45133289-45210474:-
Coord C1 exon
chr3:45210207-45210474
Coord A exon
chr3:45168932-45169070
Coord C2 exon
chr3:45133289-45133351
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTAATCTCTCCCCAGGAA
3' ss Score
10.57
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GTGAAGATGAAGGTGTCTGTAGCCTCCGGCGCGGGAGGAGGTGGGGGGCAGGAGTATTAGGGGATTCCCGGGCAAGGGCTCTGAAATCGGGCGGGTCTTGCTTTTGAGTATTGCCAAGACTGCATGGTAGGACTTGTCAAAGGCAGAAACAACTGAGTCCCTGGACTTCTGCTTTACATTGAGAGCTCAGGAGTGGGCGTTTCATTTTTCCTGCATCTGGGAAGCCTGCATGGCTATGCATTTTGACCTTTGAGATTTGTGCAGCCCG
Seq A exon
GAAAATTAACTAAAAAAATTGTTGCATATAATTACAAGGCCCTGCAAACCTTGACATATGACGATGGACTCCAGCCATGGACCAGTTTAAGATCTATTCTTCAACTATGGCCTACTTAATTTTTAATATTGTTCTCTAG
Seq C2 exon
ATACGGAAAGCATGAACAGAAGAGACCAGCCATTCACGGTGATTCAGAGGAATGACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740_MULTIEX2-2/3=C1-C2
Average complexity
ME(2-3[94=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF048228=Takusan=PU(14.5=44.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGCTCTGAAATCGGG
R:
GAATCACCGTGAATGGCTGGT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]