RnoEX0017789 @ rn6
Exon Skipping
Gene
ENSRNOG00000052954 | Ccdc173
Description
coiled-coil domain containing 173 [Source:RGD Symbol;Acc:1308818]
Coordinates
chr3:56003524-56015901:-
Coord C1 exon
chr3:56015762-56015901
Coord A exon
chr3:56006458-56006536
Coord C2 exon
chr3:56003524-56003688
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTTGACATCCTAACTACAGTAT
3' ss Score
4.42
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GATAATATGCGTGATAAAAACATCATCCGAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGAGGAAAAGACTAGAAAGTTTATCAAAGCCAAAAAACGTCTTATACAAATGAGGAAAGACAAAGAAGCTGAAACACACAG
Seq A exon
TATGTCATGGAGAGTTTCTTCCCTGCTCCTGTCTTTGTGGAGTTCCATATGCCTTCTGCTGGGATACCTACTTCTCTCT
Seq C2 exon
ATGAAAAATAAAGAGGAAGAAGAAAAACAAAGGAAAATAGAGTCTAAGGAAGAATTGCAGGCTGTCTTGAAGGCAGATAAGATGTTCCAGGAGCTTGAAAAGGAGAAAAAACTCAAAGCTAACAAAGAGAAACTGGAAGTTCAAGACGCTCACATTCACCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052954_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.382
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(13.8=100)
A:
NA
C2:
PF138681=Trichoplein=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGCAAGAGGAAGAA
R:
GCCTTCAAGACAGCCTGCAAT
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]