RnoEX0018633 @ rn6
Exon Skipping
Gene
ENSRNOG00000006623 | Cd302
Description
CD302 molecule [Source:RGD Symbol;Acc:1307606]
Coordinates
chr3:46348117-46355621:-
Coord C1 exon
chr3:46354838-46355621
Coord A exon
chr3:46349329-46349388
Coord C2 exon
chr3:46348117-46348227
Length
60 bp
Sequences
Splice sites
3' ss Seq
GCTCACCCTTCATCTTCCAGAGA
3' ss Score
8.88
5' ss Seq
AAGGTCAAG
5' ss Score
1.99
Exon sequences
Seq C1 exon
TAGAAAAACAAAAGCTTATGTTTTCAGTGCACAGTGGCACAATGCGATTCTCATTCCTGAGAGGGAAGTAACAAGGAAATACTGGACCAAAGCAAGACTGAAACTCAACAAGGCCAATACGAAACCCGCAGCTCCATGTTTGGCAACTGGAATTCCAACAGCACAGCATCATCTGGGCTCCAACAGGTTTGGGTAGCGCTATCCCTTCAGCCCACAGCACAGATGGCCGTTCCCTTGGACCAGCTGCACTCAATGTCTGCCCCTTTTGTTGGTAGACATTCTATGTTTCTGGTGTCTCCCCTATCCTGAGATCTCTCCTGCATCCTAGGCCTCACCTTTATAGCTATAAACACCAACTCCAAGCTCCAAGCAAGGAGTCTGAGCCTGTCACACATGGCCTGGCTCTGGCAGCGTCCTGGAACCGTGGCTCAGTCCCCCATAATGCTTGCCCTCATGCTTGCATCTTGTGTGTCTACAGAAACAGCACCACATAGACACTG
Seq A exon
AGAACTGAGAAATAATCTATTTTGGTGGCAGTGTTCTTCTCTCTACTGTTGGAGACCAAG
Seq C2 exon
ACTGTCCTTCGTCCATCTGGGTTCAGTTCCAAGGCAGCTGTTACACTTTTCTTCAAGTAACCATCAATGTGGAAAACATAGAGGATGTCAGAAAGCAGTGTACTGATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006623-'7-2,'7-1,8-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005916=Lectin_C=PU(13.6=39.5)
Main Inclusion Isoform:
ENSRNOT00000008987fB2672
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAGCCTGTCACACATGG
R:
AACCCAGATGGACGAAGGACA
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]