RnoEX0018691 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113802919-113805956:-
Coord C1 exon
chr13:113805774-113805956
Coord A exon
chr13:113803324-113803376
Coord C2 exon
chr13:113802919-113802963
Length
53 bp
Sequences
Splice sites
3' ss Seq
CACTTTTTATTGTCCATTAGGGA
3' ss Score
7.68
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TGGTAAAATGTCCATTTCCAGTGCTACAAAATGGAAGACAGATATCAAGAACTGAAAAAAAATTTTCCTACCAAGCACTAGTGCTGTTTCAGTGTTTGGAGGGATTTTACATGGAGGGCAGTAGCATGGTGGTCTGTGGTGCTAAGAGCTCTTGGGAGCCCTCTATCCCACAATGTCTTAAAG
Seq A exon
GGAAAGATGTGCGTTGGAAAGCAGCAGTAGCAGCCTGTACCAGTGGTGCTATG
Seq C2 exon
GTCCTAAGCCTCATTCTACCAAGCCTCCAGTTTACAGTGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917_MULTIEX1-3/4=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000057151fB2682
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTCAGTGTTTGGAGGGA
R:
CACTGTAAACTGGAGGCTTGGT
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]