RnoEX0018895 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117953444-117954912:+
Coord C1 exon
chr8:117953444-117953856
Coord A exon
chr8:117954146-117954233
Coord C2 exon
chr8:117954836-117954912
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTACTCTGTCTCTATTCCAGAAA
3' ss Score
10.46
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
CTCGCGGGACACAGAGAGAGAAGCACCGGTGCTTGTGCCTGGCGCCTGCCGAGTCCCCGACGCTCGCCCGTCCGCGCCGCTGCCCGTGGCGGCCGCGTCTCTGAACCGCGGGGTCGTGTTTGTGTTTGACCCGCGGGCGCTGGCGGCGTGGCACGCGGCTGAAGCCGGTGCCAGCGGGGCGGGGCCCGGCGCAGCGGAGGCGGAGGAAGACGGAGCGGGAGTCCGGGCAGGCCCGGCGGCGCCATGGAACTGGGCCCGGAGCCCCCCCACCGCCGCCGCCTGCTCTTCACTTGCAGCCCCACTCCTGCGCCGCAGCCCACGGGGAAGGTGCTGTTTGGCGCGTCAGCTGCTGGCGGACTGTCCCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGGAAGGGCTGGGCAG
Seq A exon
AAAAGTCTTTGGAATCTACCCTTACGGGGGGAAAATGGCCTTCACTACCACTCTTTGCTGAACCACCCGCGTCGGATCTTAGTTTCCT
Seq C2 exon
TGACTATGAGAAACCAATGGACGTGAGAAATAGCAGCAGTCTACAGAGAATGGGCTCCTCTGAATCGACTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000028141fB2715
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGGAAGGTGCTGTTTG
R:
TCAGTCGATTCAGAGGAGCCC
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]