RnoEX0019012 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135746754-135750785:-
Coord C1 exon
chr6:135750715-135750785
Coord A exon
chr6:135750242-135750321
Coord C2 exon
chr6:135746754-135748017
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACTTCTCTGTTCTCTGAAGGGA
3' ss Score
6.68
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTGGGTCTGAGCCTGGAGTGCCTGTGCCTCTGAGGAGCATGTCTGACCCCGACCAGGATTTTGACAAAGAG
Seq A exon
GGATTTCATGTAGCCCAGGCTGACTGACCTCAAGCTTACTGTGTAGTTGAAGATGACCTTGAGTTCCTGACCCTTCAGGA
Seq C2 exon
CCTGACTCTGACTCCACGAAGCACTCGACTCCGTCCAACAGCTCCAACCCTAGCGGCCCCCCGAGCCCCAACTCACCGCACCGGAGCCAGCTCCCTCTGGAAGGCCTGGACCAGCCAGCCTGCGACGCCTGAGGCCGCCAGCATAGCACCATAGGGCCAGGGAGCCCAGATGGCCCCAACATCAGTGCCAAGACTGAGCTGACCCTCCAGTGTTGTCCAAGGAAATGTAGAATCAGTTTGTAGATAGATAAAGTAATCTTTATTATAATGATCAGTTTTGTGCCACGTTGTTGGTGGCAACCGACCAGATGTGTTCGTCTGCACAGCCGCAAGGCAACACTGTTCCGTTTGCACATGAAGGACCACCACTCACCCCTCCCCCCAGGACCACCCAGGCCCACATCCATCGGCTTCCTCAGCAGATGCTGGGGTATGACCTCAAGACCTCCCTCTCTCCTGAAGCTGTCTCAAGGCCCTACAAAGACTAAAGTGCGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'63-61,'63-60,64-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000039059fB2730
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCCGACCAGGATTTTG
R:
CTATGGTGCTATGCTGGCGG
Band lengths:
183-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]