RnoEX0020281 @ rn6
Exon Skipping
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8422152-8431015:+
Coord C1 exon
chr3:8422152-8428066
Coord A exon
chr3:8430309-8430369
Coord C2 exon
chr3:8430905-8431015
Length
61 bp
Sequences
Splice sites
3' ss Seq
CGATTGCCTGTTGCCCACAGAGG
3' ss Score
7.23
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TGTCCGTGTGTCATGGTGGCACTGAGAGGTACAGTGTCCACGTGAGTGAACCTAGTGGGATGCAGAAGGAGGGTGGCCATTCAGGAGACACTGTCAAGGACAGACACTCAGGTGTCCTCTTCCAGGGACTAGGTGCACAGATGTGCCCTTTCCTAGAAGGGCAGGGACATTAGATTTCGCGGAAGACTGGGTTCTATCTTGAGACAGTTGTGTTTGTATACAAGTGGAGAGTCAGTTGTACAAGTTAGGGGTTCGGAAAGTGTGTGGCTCTCTGTTAGTTCTTTTGGAGGAGGAAGAATCCACTTGGGGCAGCTGGAGAACGCTGTTCTCAGGGCCAGCCTTGTTGTGTGGGTCAAGTAGTGAATGGAAATGAAAGATTTTTTTCCATTCTAGAAGTTTAGAGGGAGAGAGGTTGCTGCACAGGCCTCACAGACATCTCACTGTTGGGAAAGACGAAAGTCCTTTGGAATTTGGAAGGAGGAATTGAGCAGAGATTGTGG
Seq A exon
AGGCCAGAAGATGCAGTCGGATCCCCTGGAGCTGGAGTTACAGATGGTTGTGAGCCTCCAT
Seq C2 exon
GATGTTTCCGTGGGCCCTTCTCATTGTTGGGCCATTGGCCATAGCCCAACAGGAAGCCAAGCTCGAGATCTGAGTCCAAGGTTCAGCCCCTGGGATGCTGTTCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGGAGAGAGGTTGCTGC
R:
ATGGCCCAACAATGAGAAGGG
Band lengths:
137-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]