RnoEX0020636 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57015021-57029684:-
Coord C1 exon
chr13:57029508-57029684
Coord A exon
chr13:57016310-57016492
Coord C2 exon
chr13:57015021-57015197
Length
183 bp
Sequences
Splice sites
3' ss Seq
CTTACTTTTTACCCTTTTAGAGA
3' ss Score
9.37
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
GGCAATGTATTTTCCATTATGTGGAATATGGAGAATCTTTATACTGGCAAAGAAGATATATAGAGGGTCAGTCTGCAAAAGTCCAGTGTCACAGTGGCTATAGTCTTCCAAATGGTCAAGATACAATATTATGTACAGAAAATGGCTGGTCCCCTCCTCCCAAATGCGTCCGTATCA
Seq A exon
AGACTTGTTCAGTATCAGATATAGAAATTGAAAATGGGTTTTTTTCTGAATCTGATTATACATATGCTCTAAATAGAAAAACACGGTATAGATGTAAACAGGGATATGTAACAAATACCGGAGAAATATCAGGAATAATTACTTGTCTTCAAGATGGATGGTCACCTCGACCCTCATGCATTA
Seq C2 exon
AGTCTTGTGATATGCCTGTATTTGAGAATGCTATGACTAAGAATAATAACACATGGTTTAAACTCAATGACAAATTAGACTATGAATGTCACATTGGATATGAAAATGAATATAAACATACCAAAGGCTCTATAACATGTACTTATGATGGATGGTCTAGTACACCCTCCTGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'16-19,'16-16,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(3.1=3.3),PF0008415=Sushi=PD(94.8=91.7)
A:
PF0008415=Sushi=WD(100=93.5)
C2:
PF0008415=Sushi=WD(100=93.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTATAGTCTTCCAAATGGTCA
R:
ACAGGAGGGTGTACTAGACCA
Band lengths:
257-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]