RnoEX0021139 @ rn6
Exon Skipping
Gene
ENSRNOG00000009411 | Chn2
Description
chimerin 2 [Source:RGD Symbol;Acc:620140]
Coordinates
chr4:84419097-84424881:+
Coord C1 exon
chr4:84419097-84419197
Coord A exon
chr4:84423892-84424016
Coord C2 exon
chr4:84424804-84424881
Length
125 bp
Sequences
Splice sites
3' ss Seq
ACGTTGTGGTGTTTCTGCAGAAG
3' ss Score
8.37
5' ss Seq
AATGTATAA
5' ss Score
-3.61
Exon sequences
Seq C1 exon
CTAGGTGTATGGTTGGTTATCCTCCAGGTAACATCAGGGAAGTGGTGAGAGGAAAGGCTGGGCAGGTGGCAGGGGCCAGACCACCCCTGTAAGAAACTATG
Seq A exon
AAGAATCCTGCAGTGTGGCAGCCTGCTTCTCACCTTCTCACCTCGGAGTTGGCTGAACCCAGAACCAAATGCTTTGCACGTCTCCCGTCAACTGCTTGGACTCAGTTTGTTGCACTTCGATAAAT
Seq C2 exon
ATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAATGACAACCACTTCAACTATGAGAAGACACACAACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009411-'21-19,'21-17,25-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0013017=C1_1=PU(5.7=11.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTGTATGGTTGGTTATCCTCCA
R:
CTTGAAGTTGTGTGTCTTCTCAT
Band lengths:
178-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]