RnoEX0021205 @ rn6
Exon Skipping
Gene
ENSRNOG00000013610 | Chrna5
Description
cholinergic receptor nicotinic alpha 5 subunit [Source:RGD Symbol;Acc:2347]
Coordinates
chr8:59561721-59580275:+
Coord C1 exon
chr8:59561721-59561979
Coord A exon
chr8:59573270-59573503
Coord C2 exon
chr8:59580124-59580275
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTGTATCTTTGCAGGGT
3' ss Score
11.62
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACGGAGCAGCGAGGTGGGCTTCGTTCAGGCGCTGAAGAGCGAGCGGCGAGCGGCGAGAGACACCCGAGGAACGAGAGGAGTTCGGCGGCAGCCCGCTTGCTCGGCCCCTCGGGGTCCGGAGTTATCCGCGAGGCGGCCGTCGGCGGGCGGGCGATGGCGGTGCGGGGGTCGCGGCGGCGCGCGCTGCGCCTGCTCTTGATGGTGCAGCTGCTGGCAGGGCGCTGGCGGCCGACCGGGGCGGCGCGGGGCACGCGGGGAG
Seq A exon
GGTTCTGGTGCCTTGGACTGCCTGGAAAGCATCTCTGTTGGATATTGGAAGGCTTCAGAAAGGCTCTGCAGTAGCTGCTTGCTTTGTGTGATCGCCTATAGAGGCCTATCTTCTTCTGTTATCATAGCAATTATTTGTGGAATAAAAGCAAGCTGTTGCAGGCACTTACACACACACACACACACACACACACACACACACACACACTTCTAGCCTCCACAATAGCCTTTTAAG
Seq C2 exon
GGTTGCCTGAACTATCCTCTGCTGCCAAACATGAAGACAGCTTGTTTAGGGATTTATTTGAAGACTACGAAAGGTGGGTTCGCCCTGTGGAACACCTGAGCGACAAGATAAAAATCAAGTTTGGCCTTGCGATATCTCAGTTAGTGGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013610-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(9.8=57.1)
A:
NO
C2:
PF0293118=Neur_chan_LBD=PU(19.1=76.5)
Main Inclusion Isoform:
ENSRNOT00000093107fB3112
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGGAACGAGAGGAGTTC
R:
CTTGTCGCTCAGGTGTTCCAC
Band lengths:
304-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]