RnoEX0021228 @ rn6
Exon Skipping
Gene
ENSRNOG00000012448 | Chrnb3
Description
cholinergic receptor nicotinic beta 3 subunit [Source:RGD Symbol;Acc:621544]
Coordinates
chr16:68885214-68887592:-
Coord C1 exon
chr16:68887548-68887592
Coord A exon
chr16:68886653-68886793
Coord C2 exon
chr16:68885214-68885319
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTATTGATTTTATTTTGCAGACT
3' ss Score
9.82
5' ss Seq
AAGGTCCAA
5' ss Score
-2
Exon sequences
Seq C1 exon
GATGAAAAGAATCAGCTGATGACGACAAATGTGTGGCTGAAGCAG
Seq A exon
ACTCGTGTGTCTTTCTTCTTTGAACTTTCAGCGAGTAATCAAATCCCCGGGAACCATAAATATCTTATCAACAGACTTGCTGAAACCACACGAGGAAGGACACTGTCATGACCCCTCAGATTCTGCACCATCATATTCAAG
Seq C2 exon
AGACACCCACGCCTCTCTTAGTGGTCTAAAATATCGTTGCTTTGAAAGACTTTGGTTTCTGAAGTTGTCAGAGGCATTGCCAGTTCAGCAGGAAAATGCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012448-'6-3,'6-2,7-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.7=100)
A:
PF0293118=Neur_chan_LBD=PD(5.1=8.1)
C2:
PF0293118=Neur_chan_LBD=PD(3.4=28.6)
Main Inclusion Isoform:
ENSRNOT00000016656fB3114
Main Skipping Isoform:
ENSRNOT00000016656fB3115
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGAATCAGCTGATGACGACA
R:
ACTTGCATTTTCCTGCTGAACTG
Band lengths:
146-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]