RnoEX0021479 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122102383-122105097:+
Coord C1 exon
chr8:122102383-122102475
Coord A exon
chr8:122103028-122103150
Coord C2 exon
chr8:122104952-122105097
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTGTCAAATGACAGTGA
3' ss Score
2.54
5' ss Seq
ACAGTACAG
5' ss Score
-4.21
Exon sequences
Seq C1 exon
ATCTATTCTAGTCGAGAACTTGAAGAAACGTTAAATAAGATCAGGGAAATTCTGTCAGATGACAAACATGACTGGGACCAGCGTGCCAACGCA
Seq A exon
TGACTCTTCTCAGTATCGTCAAGGCCAGGAAAGGGCCAATTTGAAGATGCCTGTGCTCTCAAAGCTTCCAGTCCGACTAATCAAGCGCCTTCCTGACCAGTACTGCTTTTACGACATCATACA
Seq C2 exon
CTTAAGAAAATCAGATCACTACTTGTTGCTGGGGCTGCACAGTATGACTGCTTCTTCCAGCATTTGCGTTTGTTGGACGGCGCACTTAAGCTGTCTGCGAAGGACCTCAGATCCCAGGTGGTCAGGGAAGCTTGCATCACCGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'23-18,'23-17,24-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PU(11.0=77.4)
A:
NA
C2:
PF123483=CLASP_N=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGTCGAGAACTTGAAGAAACGT
R:
GCAACGGTGATGCAAGCTTC
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]