RnoEX0021703 @ rn6
Exon Skipping
Gene
ENSRNOG00000048726 | Clec2d
Description
C-type lectin domain family 2, member D [Source:RGD Symbol;Acc:620070]
Coordinates
chr4:162299128-162301003:+
Coord C1 exon
chr4:162299128-162299253
Coord A exon
chr4:162300152-162300330
Coord C2 exon
chr4:162300897-162301003
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTGTATTGTCTGCATTTTAGTAA
3' ss Score
6.55
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTAAAATGCTCCAAGGAAAGCTTCCCAGAAACATCCCCCTGGAGTATCCTGCTGGGCTTTACTGCTGCTACGTAGTGATCATTGTCCTCAGTGTAGCTGTAGTTGCTCTTTCTGTTGCTTTGTCAG
Seq A exon
TAAAAAAGACAGCACAGATCTCAACCATAAATACTTATGCTGCTTGCCCGAGAAACTGGATTGGAGTTGGAAATAAATGTTTTTATTTTAATGAAATACCAAGTAACTGGACATTGAGCCAGACCCTCTGTAAGGAACAAGGGGCCGAGCTAGCACGATTTGACACCGAGGAGGAGCTG
Seq C2 exon
AATTTCCTAAGGAGATACAAAGGGAGTTCAGGTTACTGGTTCGGTCTGCACAGAGAGTCATCAGCGCACCCTTGGAAGTGGACAGACAACACTGAGTATAACAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048726_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(26.7=45.0)
C2:
PF0005916=Lectin_C=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCTCCAAGGAAAGCTTC
R:
TGTTATACTCAGTGTTGTCTGTCCAC
Band lengths:
226-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]