RnoEX0021738 @ rn6
Exon Skipping
Gene
ENSRNOG00000054251 | Clec7a
Description
C-type lectin domain containing 7A [Source:RGD Symbol;Acc:1565140]
Coordinates
chr4:163217813-163220813:-
Coord C1 exon
chr4:163220695-163220813
Coord A exon
chr4:163218257-163218436
Coord C2 exon
chr4:163217813-163217939
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTACTACTCCTTTGTTGCAGGGT
3' ss Score
9.47
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCTGGATAGGTCTATCTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCCCAACTC
Seq A exon
GGTGGTGGTAACTTAATTTCTGTCTCCAAACCACTTGAATGTCAGGGAAAATTTTTGGAAATTACTGGTGAAAATTCTCCCTGAGGTCTGGGTCAAGGCAGTTTATCCTGCCCCTGTCATTTCAAGAGCAGATTTTCTCAATCTACCAACCACTGGGTCAAGGAGAGGCAACCATTCAAG
Seq C2 exon
GTTTCAAGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGGATCCATGGGTCAGAGGTCTACAACCAAATGTGCATTGCTTCCTCATTCACTATCTGTGAGAAGGAACTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054251_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(36.4=100)
A:
PF0005916=Lectin_C=PD(2.9=33.3)
C2:
PF0005916=Lectin_C=PD(36.4=90.7)
Main Inclusion Isoform:
ENSRNOT00000077793fB3199
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCATTGAAAGCCAAACATCT
R:
TAGTGAATGAGGAAGCAATGCACA
Band lengths:
226-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]