RnoEX0021837 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188476820-188479201:+
Coord C1 exon
chr2:188476820-188477086
Coord A exon
chr2:188478686-188478814
Coord C2 exon
chr2:188479032-188479201
Length
129 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTTTGCTTGTGAAGAAC
3' ss Score
4.09
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
CGGAGAGGCCAGAGCCGGAGACCGAGCTGGGATCGGGCCCCGGGCGGGGGCGGTGCGAGAGGCGCCGAGCGGATCCTGGGGGCGGGGACGGAGCCCGGGCGGGCGGGACTGGAGCAGAGCCCGGGAACGGGGCGGGAGGTCCCAGGGCCCCGGGTTGGGGGGTGGAACCGCACTTCGTCGCCGCGGGGGTGCCGGGACTCCGGCCGCAGTGCCGCCGCCATCACGGACTTCCTGTGGGACAAGCGCACGGGCCTCGCCGCCAGAACG
Seq A exon
AACTCAGGATGGCACAGCTGCGCATGTTAGATGGCAGCAGAGATGAACTGTGGCAATATTAGTCACACACTTGTCACCTGTCGTGAACTGTGGCTCAGACCAGAAGGTCTTCATGGAGCCATGTTTGAG
Seq C2 exon
ATGCCTCATCCCCGAAGGTACCATTCCTCAGAGAGAGGTAGCCGGGGAAGTTACCACGAGCACTATCGGAGCCGAAAACATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTACCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGATAGCTACCATGTTCGGTCTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.121 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTGGAGCAGAGCCC
R:
TCGCTTATGTTTTCGGCTCCG
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]