RnoEX0022612 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14331050-14334018:+
Coord C1 exon
chr3:14331050-14331226
Coord A exon
chr3:14333273-14333444
Coord C2 exon
chr3:14333884-14334018
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTTTGAGATCAGGTC
3' ss Score
4.18
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAGCTCGCAGAGCTGGAAAATGCCCTCCAGGAGCAGCATGAGGTGAACGCATCCCTGCAGCAAGCCCAGGGAGATCTCAGCGCCTATGAAACTGAGCTAGAGACTCAGCTGAAACTAAAGGATGCTGAAACCAGCCAGCTCAAGCAGGAGTTAGAAAACCTCGTAAGGCGCACTCAG
Seq A exon
GTCTCATTTTGTAGCCCAGGCCAACTTCTTACTCCTCCTGCTTCAATTTCCCAAGTGCTGGGATTACAGCAATGTGCCACCATGCCAAGCTTCCAAAAGTATGAGTATGAGTGTTGCCTGCAGGTGTGTCTATGTAGCACATGCATTTTTTGCAACCCACAGGAGCCAGCAG
Seq C2 exon
CTAGAACAATCGGTGCTTCAAACAGAGCTGGAGAAGGAAAGACAGTCCCTCAGGGATGCCCTGGGCAAAGCCCAGTCCTCAGAAGAGAAGCAACAGGAGAACAGTGAGCTCCGTGCACAGCTTAAGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.000 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000092745fB3342
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGCCCTCCAGGAGCAG
R:
CTTCTGAGGACTGGGCTTTGC
Band lengths:
247-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]