RnoEX0022865 @ rn6
Exon Skipping
Gene
ENSRNOG00000026415 | Col14a1
Description
collagen type XIV alpha 1 chain [Source:RGD Symbol;Acc:1305806]
Coordinates
chr7:95271494-95273298:+
Coord C1 exon
chr7:95271494-95271649
Coord A exon
chr7:95272433-95272785
Coord C2 exon
chr7:95273219-95273298
Length
353 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCCTGTCCCTTAAGATG
3' ss Score
8.57
5' ss Seq
ACTGTACGA
5' ss Score
2.01
Exon sequences
Seq C1 exon
GACCTTCAGGGGAAAGTCGTCCTGGCAGTCCTGGGCCACCTGGCTCTCCTGGACCAAGGGGTCCCCCGGGCCACCTGGGAGTACCTGGGCCACAGGGTCCTTCTGGCCAGCCTGGATATTGTGACCCCTCCTCGTGTTCTGCTTACGGCGTTGGAG
Seq A exon
ATGTCATCCCGTACAATGATTACCAGCACTGAAGTGCCAGTCCTGCTGTTGGTTGCATTGGCCTGGGCATTTGGCTATGGATACAGAACTGGTTCACCACCACTACTAAGCTCCTGCCTCTGATCACGGTCACCTCTTTCCTGCCTCACCTGCTTTGCTGTCTCAGACTTTCAAGTCCCCTGCCTACCCCGCTCCAGACATGCTGGAGTGATAAAATCACAGTGTAACAAAGTAACATGAGACAGCTGTAGTAGAGCTGACTTCCCGGCCAGTCAGAATGGAGGTCTGTGATTGCGCACCAAGACTTTATCCCAAACGCCTCTGGACGGAGTCTCTGTAATGGTTAACTAACT
Seq C2 exon
TGTCCCATCCAGATCAACCCGAGTTCACACCGGTCCAGGACGAGCAGGAGGCCTTGGATCTGTGGAGCGCAGGCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026415-'56-57,'56-56,57-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(73.7=79.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000067649fB3370
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGGGGAAAGTCGTCCT
R:
ATGCCTGCGCTCCACAGATC
Band lengths:
230-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]