RnoEX0023334 @ rn6
Exon Skipping
Gene
ENSRNOG00000014851 | Col4a4
Description
collagen type IV alpha 4 chain [Source:RGD Symbol;Acc:1305355]
Coordinates
chr9:88343438-88357182:-
Coord C1 exon
chr9:88357094-88357182
Coord A exon
chr9:88356555-88356718
Coord C2 exon
chr9:88343438-88343594
Length
164 bp
Sequences
Splice sites
3' ss Seq
TGAGTTGAACTGCTTTTCAGGCT
3' ss Score
5.36
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AACTCGCAGCCAGCACACAGACCTGAGGCTGGACAGGCTGTGAAGAGGAACACGGTCACGGGTGGATTACCTCCAGCCACAACCTCGAG
Seq A exon
GCTAAACCTTATCTGCGGAAACGGAGGAGAAAATGAGAGCCAACTCTGGTCCAGGGTGTCCCTGACTGGGAGGGCCTTCGATGCAAATGTCACTTCTGGCTTGGTAGGATACATTGTTGCAAGGCTCTTAACGCTATCTTCTGCAGCAGACTACACTGAATGAG
Seq C2 exon
GGCACTGACTCCCAACTGTCCATGAGAATCTTCTGGGAGAGAGGAGAAGGCCGGAGGAGTATTTTGGGCACAGAGGTCATCCCTTGAAGGCACTAGTGCTCAAGGTCTTCATGAGGTGCTTTTTCAGATGGACCGAGTCCTACGGCACAGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014851_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCGCAGCCAGCACAC
R:
ACTCGGTCCATCTGAAAAAGCA
Band lengths:
227-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]