RnoEX0023335 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112769645-112776834:+
Coord C1 exon
chrX:112769645-112770074
Coord A exon
chrX:112770886-112770963
Coord C2 exon
chrX:112776532-112776834
Length
78 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCCACTTGCGTTTAGGAA
3' ss Score
5.36
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGCGGTGCGGGAGGAGAGCGAGGAAAGTAGATTTGTAGGACGTGAGTGAGGAAAGTTTGCAAGTCCCAACAGAAGGCAAAGTGCTCCCTAGAGACTGGCTTTGGGGAGGGGAGGGGGGAGGGAAGAACAGCTTCCTTCTCTTCTTGTTCTCGCTCTCCCTCTCTGTCTTATTTTAATCCCTGCACTCTTCAAAATCTCTTCCCCCAAGTGCACCGGCACAATCGGGACACTCACTGTCCCTTTCTAGCTCTAGCTCTCTTCCCAATAACCCCTCAAGATTATGTCAATCGGTCTGAAGAGACCTGGGATTCTCTGCGGGCGCTGACGGAGCTGCGGGAGCCAGAGAAGAATGCAAGTGCCTGGAGTGTGCCTGGCCGCCGGCTGGTTCTTACTGGCCCTGTGTCTGTGGGGGCAGCCGGGAGAGGCTGCG
Seq A exon
GAATGTAGACTGGATACCACAGACTGTTCCTGACAAGGGAATCTGGAGTCCCAACACCCACTCTCCTGGAGATAAGAG
Seq C2 exon
GGGAAACCAGGAGAACCCTGAAGATCGAGATAAAGGATTCTAGGAGCCAGAGGGGTCAAGGACACCAGGAGAACAAGGCACACAGAATCAACTAACCTGAGCTCATATGAGCTCACAGAGACTGAAGCGGCAGTCATGGACCCTACAAGGATCTGTGCTTGGTCCTTTTTGCATACACACAATGGTTGTTTAGCTTGTGGGATTCCCAAAAGTGGGAATCGGGGGAGGTATCCCTGACTCTTTTGCCTGCCCTTGGAACAATTTTCATCCTACTGGATTGCCTTCTCAAGCCTTGATATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-'0-2,'0-1,1-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(7.1=22.2)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000064478fB3405
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGCAAGTGCCTGGAGTG
R:
CTGTGTGCCTTGTTCTCCTGG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]