RnoEX0023349 @ rn6
Exon Skipping
Gene
ENSRNOG00000018951 | Col4a5
Description
collagen type IV alpha 5 chain [Source:RGD Symbol;Acc:1565499]
Coordinates
chrX:112953433-112955000:+
Coord C1 exon
chrX:112953433-112953531
Coord A exon
chrX:112954483-112954675
Coord C2 exon
chrX:112954950-112955000
Length
193 bp
Sequences
Splice sites
3' ss Seq
TAACATATAAGAGTTATTAGATA
3' ss Score
-10.71
5' ss Seq
TAGGTAGCA
5' ss Score
2.58
Exon sequences
Seq C1 exon
GTGGTGGAGGGCGTCCTGGACCACCAGGACCTCCTGGTGAAAAAGGCAAGCCAGGTCAAGATGGCATTCCTGGACCAGCAGGACAAAAGGGAGAACCAG
Seq A exon
ATAGGTGAATGCCAGCAGCAAACCACTGAACTGAGAACAGGACCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAGAGCTTGAAGGGGCTCGAGACCCCATATGAACAACAATGTCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACATGGACTGACCCTGGACTCTGACCTCATAG
Seq C2 exon
GTCAACCAGGCTTTGGAATCCCAGGACCTCCTGGACTCCCAGGACTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018951-'45-47,'45-46,46-47
Average complexity
S
Mappability confidence:
88%=100=50%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(52.4=100)
A:
PF0139113=Collagen=PD(1.6=33.3)
C2:
PF0139113=Collagen=PD(7.9=27.8),PF0139113=Collagen=PU(21.7=72.2)
Main Inclusion Isoform:
ENSRNOT00000064478fB3406
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCGTCCTGGACCAC
R:
CAGAAAGTCCTGGGAGTCCA
Band lengths:
144-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]