RnoEX0023367 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112407884-112408836:-
Coord C1 exon
chrX:112408645-112408836
Coord A exon
chrX:112408463-112408567
Coord C2 exon
chrX:112407884-112407936
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGACCACTTTCTTCTCACAGCCC
3' ss Score
9.92
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GAGCTCCAGGAAATCAGGGCCCCATTGGGCAGCCTGGGATGCCTGGACACAGTGTGAGAGTGGGCTACACATTAGTAAAACACAGTCAGTCAGAACACGTGCCACCATGCCCCATTGGCATGAGCCAGCTATGGGTGGGTTACAGCTTGCTGTTCGTGGAAGGGCAGGAGAAAGCCCATAACCAGGATCTGG
Seq A exon
CCCTTTAGACCTACGGTTGCAAAATAGGCCACAAGCATTAGCCCTGGAGTCAAAAGGATTGTGATCCAAATGCTGGTCCTACTGCTTCAAAGTCACATGCCCTGG
Seq C2 exon
GATTTGGGCTGGGCTCCTGCCTGCCCCGATTCAGCCCCATGCCCTTCATTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(38.3=35.4),PF0141314=C4=PU(40.6=66.2)
A:
PF0141314=C4=PD(2.2=33.3)
C2:
PF0141314=C4=FE(16.0=100)
Main Inclusion Isoform:
ENSRNOT00000079180fB3409
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCAGGAAATCAGGGC
R:
TAGAATGAAGGGCATGGGGCT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]