RnoEX0023498 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114444070-114446772:-
Coord C1 exon
chr8:114446176-114446772
Coord A exon
chr8:114445316-114445457
Coord C2 exon
chr8:114444070-114444690
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTGTTCTTGCTGCAGGTT
3' ss Score
8.69
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
CAGCAGCCTCCCCGTAGAGGCCAACAAGTACCGTGTGGCCCTGGCCCAGTACAGTGATGCTCTCCACAATGAGTTCCACCTAGGCGCCTTCAAGAACAGGAACCCCATGCTGAACCACCTCAAGAAGAACTTCGGGTTCATCGGCGGCTCCCTGAAGATTGGGAACGCCCTGCAGGAGGCTCACAGGACCTATTTCTCTGCTCCCACAAACGGAAGAGACAAGAAACAGTTCCCCCCAATCCTGGTGGTGCTGGCTTCAGCGGAGTCCGAGGATGACGTAGAAGAGGCTTCGAAGGCCCTGCGGGAAGATGGGGTGAAAATCATCTCTGTGGGGGTGCAGAAGGCTTCTGAGGAAGACCTGAAGGCCATGGCCACCTCTCAGTTTCATTTCAACCTCAGGACTGCCAGAGACCTCAGCATGTTTGCCCCAAACATGACACAGATCATCAAGGATGTGACTCAGTACAGGGAAGCAATGACTGATGACATTATTGTAGAAG
Seq A exon
GTTTATTACTGGTTCAGCGAAAACCAATTTGGTTCTGGAGAAACCTTTAGCTTTGGGAACCACACAGTGTAACTGCAGAATGTCAAGACTGAAGCCAACCTCTGGTTATTCAAACCCTATTGTGGAGCTAAGAATTGAAGTG
Seq C2 exon
CTTGCCAAGGCCCATCTGTGGCCGATGTGGTATTCCTGTTGGATATGGCCATCAACGGCAGCCAAGAGAACCTAGATCATCTTAAAGCATTCCTGGGGGAAAGTGTCTCTGCCCTTGACATAAAGGAAAACTGCATGAGGGTTGGCCTGGTGGCCTATAGCAACGAAACAAGGGTGATCAGTTCTCTGAGCATGGGTGTCAACAAGACGGAGGTCTTACAGCGCATACAGGATCTGTCCCCTCACGTAGGGCAGGCCTACACAGGAGCTGCCCTCAGAAAGACGAGGAAGGAAGTCTTCAGTGCACAGAGGGGCAGTCGGAAGAACCAAGGGGTGCCTCAGATTGCTGTGCTGGTGACCCACAGAGCTTCAGATGACAACGTGACCAAGGCAGCTGTCAACCTCCGGCGGGAGGGAGTGACCGTCTTTACCATGGGCGTAGAGGGGGCTAACCCAGAACAGCTGGAGAAGATCGCATCCTACCCTGCCGAGCAGTTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.5)
A:
NO
C2:
PF0009223=VWA=WD(100=86.1)
Main Inclusion Isoform:
ENSRNOT00000056414fB3420
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGCCACCTCTCAGTTTC
R:
CAGAGACACTTTCCCCCAGGA
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]