RnoEX0023505 @ rn6
Exon Skipping
Gene
ENSRNOG00000023007 | Col6a6
Description
collagen type VI alpha 6 chain [Source:RGD Symbol;Acc:1309172]
Coordinates
chr8:114380070-114386821:-
Coord C1 exon
chr8:114386759-114386821
Coord A exon
chr8:114382888-114383055
Coord C2 exon
chr8:114380070-114380132
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAGCTTCTAAAACATCCTAGATA
3' ss Score
2.22
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTGATATTGGGGACCCTGGCGATCCAGGAGAGGCTGGTCCCAAGGGAGCCAGAGGCAAAACG
Seq A exon
ATAGGGCCAGCCTCTGGACACCAAGAATTCAGCACATCAGCGGGTGTGAGGGGAGTTTCGTATGTAAACCCTAACAAGCCGATAAGAGGAAACAGGCGCCGGGAAGGTTTGACGATACAGTGAACATCTGAAATGACTTCTATTGCCTCCAGATGTGTCAATAGTGTG
Seq C2 exon
GTATCTGCTGGGATTCCAGGAGAGCCAGGATCCCCCGGGGAGCCAGGACCCCCTGGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023007_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.5=100)
A:
PF0139113=Collagen=PD(13.5=17.1)
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000056414fB3422
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCAGGAGAGGCTGGTC
R:
CTTCCTTCCAGGGGGTCCT
Band lengths:
106-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]