RnoEX0024356 @ rn6
Exon Skipping
Gene
ENSRNOG00000008193 | Cr1l
Description
complement C3b/C4b receptor 1 like [Source:RGD Symbol;Acc:2399]
Coordinates
chr13:113824892-113832523:-
Coord C1 exon
chr13:113832448-113832523
Coord A exon
chr13:113828023-113828127
Coord C2 exon
chr13:113824892-113825087
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCACTGCCAATTAGCAA
3' ss Score
3.39
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAATTTTCATTGGGATAATCGTCCTTATTTTATTCATCATTTTTTCCTACTGGATGATTATGAAGTTTAAAAAACG
Seq A exon
CAATTCCACCAATGAAAAGTGTAAAGAAGTGGGTATCTATTTAAATTCTAAAGAAGACAGCTGTGTTCAGCCTCAGTCTCTGCTCACAAGTCAGGAGAACAACAG
Seq C2 exon
TACCAGTAGCCCAGCACGGAATTCACTCACTCAAGAAGTCTAATAGCCGCCATGTACAGTGATGTCTCTGAAACGCAAAACATTTCCTGTCTGTATCACTTTTAAAATAAACTATTTTCTTTTAAAATCTAGATGTGTTGTTCATACATAAGGAATGCAACAAACTCATGGCCACTCAGGATATTTAACTTGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008193_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTTCATTGGGATAATCGTCCT
R:
AGTGGCCATGAGTTTGTTGCA
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]