RnoEX0024407 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56413441-56429400:-
Coord C1 exon
chr13:56428822-56429400
Coord A exon
chr13:56416364-56416450
Coord C2 exon
chr13:56413441-56413636
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTGTTTAAATTTTCCCTTAGCCA
3' ss Score
6.59
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGACAGCAGTTGTTGCTTAGACACAGCCAATGATTTGGACACAGACTGTGAAGATCTGAAAGACCCCTGCTTGTCCAGTCCCTGCCAAGGAACCGCCACTTGTGTGAATATCCCAGGGGAAAGGAGCTTCCTGTGCCAATGTCCTCCCGGGTACAGTGGGCTAACCTGTGACACTGCCACCAATTCCTGTGGAGGGAATTTGTGCCAACATGGAGGCACCTGCCATAAAGACCCTGAGCATCCTGTCTGTATCTGCCCTCCTGGGTATGCTGGAAGGTTCTGTGAGACAGATCACAATGAGTGTGATTCTAGCCCTTGCCACAATGGGGCTGTGTGCCAAGACAGAATCAACGGCTACTCCTGCTTCTGTGTGCCTGGATACCAAGGCAGGCATTGTGACTTGGAAGTGGATGAATGTGTTTCTGATCCCTGCATGAATGAGGCTGTGTGCCTCAACGAGATAGGAAGGTACACTTGTGTCTGTCCTCAAGAGTACTCTG
Seq A exon
CCATTTGGAATTCATCTTTTGAGAACTCTCTGGTGCCCACATCCCCTTCTGGTTCAACACAGTTCTCGAAGTCTTAGCTGGGGAAAG
Seq C2 exon
GCGTGAACTGCGAGTTGGAGATTGATGAATGCGGATCCCAGCCATGTCTACATGGTGCCACGTGTCGGGACGCCCTTGGGGGCTACTTCTGCGACTGTGCACCTGGATTCCTTGGAGACCACTGTGAACTCAACTTTAATGAATGTGAAAGTCAGCCGTGTCTCCATGGAGGTCTATGCGTAGATGGAAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=17.0),PF0000822=EGF=WD(100=16.0),PF0000822=EGF=WD(100=16.0),PF0764510=EGF_CA=PU(82.1=16.5)
A:
PF0764510=EGF_CA=PD(21.4=34.6)
C2:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
Main Inclusion Isoform:
ENSRNOT00000032122fB3569
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGTGTGCCTGGATACC
R:
GCTGGGATCCGCATTCATCAA
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]