RnoEX0024427 @ rn6
Exon Skipping
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30125168-30131562:-
Coord C1 exon
chr12:30130815-30131562
Coord A exon
chr12:30130017-30130151
Coord C2 exon
chr12:30125168-30126333
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTTCATTATCTGTTCATCAGTTG
3' ss Score
4.71
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TCTCATGGAGTGGATCTTAAATCCAGTCAGCAGACAGTCGGACCCTCCCACATCGTCTGTGCTATTCTTATGCCAATATACCCAGAGCACAGGTTCCATGGCTGGGTGATGCGAATGCCTGCTTTTCTCCTCTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCCTTCTAGCGCTGTGTATGTGAGTCAGTAGGCGTAAAGCTTCTAGTTGGGCACTAGTTCTGTTTCTCCATCCTTGGTAACATAGGTAAGTGGCATCTTCAGCAATAGGGCCTCCCCCTCAGGTTGTGGGGGTAACAGTGCCGCTAGAAATACCCTGTGATTTGGGGGACCTCTTTGACCCATGACTTATCAAGAAGTAAACCGTTCCTGGCACTGGGGTTTTTACTTGGTCACATATGATGTCTACTTGGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
TTGATGGACGTCTTGGCTGTTTCTGGTTTCGGGCTGTCATGAACAGAGCAGCAGTGAACATGGATGAGCAAGCGTCTCTAGAGGAAGACGAAGAGTCCTGTGGATATATGCCCAGGAGTGATGCTGGGTCATAAG
Seq C2 exon
ATGGTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGAAGCTCTCCTGCACACTGTCACCAGCATCCTGCCTGCAGGTCCAGAGGATGAGCAGAGCAAAAGCACTAGCAATGACGCGGCAATGGAAGAGGAGGAGCCTGCATAGACATCTGTGGCCATTATGACACAGCTGGCCAGGTTGTTCGTGATGCTCAAAGCCACAACAGCCATTTCCTGGACGTTCAGAGAACTGTTTATTCGGCCTGACCCCTCTCTCAAATATTCCTGATCTCAGGATTGGTTGAGAAAAAAAATCACAAAAATAAGATGAAAAGAAATCTTTGTGCCTTGGGTTCAAGAAACATGGGGTCAGAGAAGGGCAGAGGGCTCGAGATGGGGCAGCATGGCTATGCAGCCCTCTGGGTAGAAAGGCTTGTGTGGCCTCTGTCGCACTTGTACACAGTGGGGAGCTATTCAGGCACTTTGATGACTGTGTTGTAGGCAATGTCAGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901-'22-12,'22-11,23-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.898
Domain overlap (PFAM):
C1:
NA
A:
PF0387411=RNA_pol_Rpb4=PD(6.2=42.9)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=48.0)
Main Inclusion Isoform:
ENSRNOT00000001202fB3571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAACCGTTCCTGGCACTG
R:
TGTCTATGCAGGCTCCTCCTC
Band lengths:
254-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]