RnoEX0024990 @ rn6
Exon Skipping
Gene
ENSRNOG00000019653 | Csrnp2
Description
cysteine and serine rich nuclear protein 2 [Source:RGD Symbol;Acc:1308916]
Coordinates
chr7:142125802-142132173:-
Coord C1 exon
chr7:142131710-142132173
Coord A exon
chr7:142131013-142131130
Coord C2 exon
chr7:142125802-142126033
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAGCTTGATCCTTTTCACAGGCC
3' ss Score
6.6
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GGAAGATCCGCAGCCTCTCTCTTCAAGGTGGGCAGCTGCCCTACAGGTGCTCTCCGAGGTCCGCCGAGGACGCTTCAGAACCGGCGAGGGTTTTGCTGCACTGGCCGCAAAACTCCCGCATACTCCCGGCATGCCCTGGGTGTGGGCCGGGTATAGACTCCATTTCCCAGGCTGCTCCGGGCCTCGGCCACGACGCGCCGGCGCCTATAAGAGGCAGAGCGCTGCAGCCGGAGCCTATTGTTAGCCGGAGCCGGGACGGTTCTGGGCTTTGCTGCCCGGGGAGCCGGAGTGCAGAGCCGCCCGCCCCCCGCCGCCTGCCGGCCGGCCCACACACCCTGCAGCCCCGAGATCCACGCGACGGGCCCGGGAGCCGGCACGCCTCGATCTCCCCTCCTTGCACACGGACTGAATAGGCAGCTAGGGCGGCGGAGACCGTGACGGGAGAAGCGGCTGCGGAGGGGCCG
Seq A exon
GCCTAAACACGCAGCCGCCGCCTGCCATCCATCCCTTTGAGTGCTGTGGTCTTGATTCACCCTTTTAGAAGGGTTGAGAGTGGCAGTGTGACACAGAAGCCATTCTTCAGTATGAAAG
Seq C2 exon
AGTCCTCATGCTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGGTTGGCTCCCCAAGGAGACCTTTGGAAGCCAATGGATGCGTTCTCGGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCGGATGATGAGATGTCCAGCAGCGACAGTGCAGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019653_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.706
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACACGGACTGAATAGGC
R:
GTCGCTGCTGGACATCTCATC
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]