RnoEX0025865 @ rn6
Exon Skipping
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263791389-263798109:-
Coord C1 exon
chr1:263798009-263798109
Coord A exon
chr1:263796223-263796385
Coord C2 exon
chr1:263791389-263791538
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTGTCTCCTTCCAGCTG
3' ss Score
12.57
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GGCGGGCACAGAGTTTTGGAGAGAGGAGAAAGGTGAAGAAGAGCCGAGATGGAGGAGGAGGAGAAGACGACCCAGACCGATGTGGCTTCAAATGGCCACAG
Seq A exon
CTGGCCAAAGAGTACGGGCCTGTTTACACGCTGTACTTTGGAACCTCTCCTACTGTGGTCCTACATGGCTATGATGTGGTGAAGGAGGCGCTTCTCCAGCAAGGGGATGAGTTCCTCGGGAGAGGACCTCTGCCCATCATCGAAGATACCCATAAGGGATATG
Seq C2 exon
GACTCATTTTCAGTAATGGAGAGAGGTGGAAAGTCATGCGACGCTTCTCCCTCATGACTCTGAGGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTTGTGGAGGAATTACAAAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291-'2-9,'2-6,4-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCACAGAGTTTTGGAGAG
R:
TTTTTGTAATTCCTCCACAAGGCAC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]